PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0029s0127.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 194aa    MW: 21085.4 Da    PI: 5.6963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0029s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-172272155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa a++ a+++++g
  Kalax.0029s0127.1.p 22 PVYLGVRKRA-WGKWVSEIREPRK---KSRIWLGTFQTAEMAAIAHDVAALAIKG 72
                         5799***887.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-102272IPR001471AP2/ERF domain
SMARTSM003805.6E-322386IPR001471AP2/ERF domain
PROSITE profilePS5103221.4042380IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-302381IPR001471AP2/ERF domain
CDDcd000181.22E-292482No hitNo description
PRINTSPR003671.6E-92435IPR001471AP2/ERF domain
PRINTSPR003671.6E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEQVGKTREE EGKNSNSSMH HPVYLGVRKR AWGKWVSEIR EPRKKSRIWL GTFQTAEMAA  60
IAHDVAALAI KGGKVRLNFP DLARELPRPA TADPKDIQAA AAQAATYKLS ASGPAAASSD  120
NSPATTASPT CTHSESRNSD SVADSSFDDA FFDTLPDLFD NLSSEADIYE SLESSCFLQK  180
DFCWASGEWG RIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152480663ATERF1
3gcc_A1e-152480663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677077.12e-47PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9ZQP34e-43ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0J8F7172e-47A0A0J8F717_BETVU; Uncharacterized protein
STRINGfgenesh2_kg.4__2683__AT2G44940.13e-43(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-32ERF family protein